cytoscapePlot {graphite} | R Documentation

## Plot a pathway graph in Cytoscape

### Description

Renders the topology of a pathway as a Cytoscape graph.

### Usage

    cytoscapePlot(pathway, ..., cy.ver = 3)

### Arguments

`pathway` | a `Pathway` object.
`...` | optional arguments forwarded to `pathwayGraph`.
`cy.ver` | select a Cytoscape version. Only version 3 is supported in this release.

### Details

Requires the `RCy3` package.

### Value

An invisible list with two items:

`graph` | the `graphNEL` object sent to Cytoscape.
`suid` | the RCy3 network SUID.

### See Also

`Pathway`

`pathwayGraph`

### Examples

    ## Not run:
      r <- pathways()
      cytoscapePlot(convertIdentifiers(reactome$`Unwinding of DNA`, "symbol"))

    ## End(Not run)

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