pathwayGraph {graphite} | R Documentation

## Graph representing the topology of a pathway

### Description

Builds a `graphNEL` object representing the topology of a pathway.

### Usage

      pathwayGraph(pathway, which = "proteins", edge.types = NULL)

### Arguments

`pathway` | a `Pathway` object.
`which` | the pathway variant you want. See `Pathway` documentation for a list of the supported variants.
`edge.types` | keep only the edges maching the type names in this vector.

### Value

A `graphNEL` object.

### See Also

`Pathway`

`graphNEL`

### Examples

      r <- pathways("hsapiens", "reactome")
      pathwayGraph(r$`mTOR signalling`, edge.types="Binding")

[Package graphite version 1.26.3 Index]