pathways {graphite} | R Documentation

## Retrieve a list of pathways.

### Description

Retrieve a list of pathways from a database for a given species.

graphite currently supports the following databases:

- BioCarta

- HumanCyc

- KEGG

- NCI-Nature Pathway Interaction Database

- PANTHER

- PharmGKB

- Reactome

- SMPDB

Call the `pathwayDatabase` function for more details.

### Usage

      pathways(species, database)

### Arguments

`species` | one of the supported species
`database` | the name of the pathway database

### Value

A `PathwayList` object.

### See Also

`PathwayList`, `pathwayDatabases`

### Examples

      pathways("hsapiens", "reactome")

[Package graphite version 1.26.3 Index]