msaplot {ggtree} | R Documentation

## msaplot

### Description

multiple sequence alignment with phylogenetic tree

### Usage

    msaplot(p, fasta, offset = 0, width = 1, color = NULL,
      window = NULL, bg_line = TRUE, height = 0.8)

### Arguments

`p` | tree view
`fasta` | fasta file, multiple sequence alignment
`offset` | offset of MSA to tree
`width` | total width of alignment, compare to width of tree
`color` | color
`window` | specific a slice to display
`bg_line` | whether add background line in alignment
`height` | height ratio of sequence

### Value

tree view

### Author(s)

Guangchuang Yu

[Package ggtree version 1.12.7 Index]