annotate.gsp {gespeR} | R Documentation

## annotate.gsp

### Description

Query Biomart HGNC symbols for the entrez identifiers of estimated GSPs. Currently, only implemented for species "hsapiens".

### Usage

    ## S4 method for signature 'Phenotypes'
    annotate.gsp(object, organism = "hsapiens")

    ## S4 method for signature 'gespeR'
    annotate.gsp(object, organism = "hsapiens")

### Arguments

`object` | A `gespeR` or `Phenotypes` object
`organism` | String indicating the biomaRt organism

### Value

data.frame containing gene identifier, gene symbol and phenotypic score

### Author(s)

Fabian Schmich

### See Also

`gsp`

`ssp`

`scores`

### Examples

    data(stabilityfits)
     gspA <- gsp(stabilityfits$A)
    ## Not run:
     annotate.gsp(gspA)

    ## End(Not run)

[Package gespeR version 1.12.0 Index]