TargetRelations-class {gespeR} | R Documentation

## TargetRelations

### Description

Class used to represent siRNA-to-gene on- and off-target relations for a knockdown library and a set of genes.

### Usage

    TargetRelations(targets)

    ## S4 method for signature 'character'
    TargetRelations(targets)

    ## S4 method for signature 'Matrix'
    TargetRelations(targets)

### Arguments

`targets` | Path to a .rds target relations matrix file or `Matrix` object

### Value

A `TargetRelations` object

### Slots

`siRNAs`

  The siRNA identifiers

`genes`

  The gene identifiers (Entrez)

`path`

  The path to and `.rds` `TargetRelations` file

`is.loaded`

  An indicator if target relations values are loaded

`values`

  The quantitative target relation values between siRNAs and genes

### Author(s)

Fabian Schmich

### See Also

`join`

`loadValues`

`unloadValues`

`writeValues`

`values`

`path<-`

### Examples

    trels <- TargetRelations(readRDS(system.file("extdata", "TR_screen_A.rds", package = "gespeR")))

[Package gespeR version 1.12.0 Index]