genomeAxis {genoset} | R Documentation

## Label axis with base pair units

### Description

Label an axis with base positions

### Usage

    genomeAxis(locs = NULL, side = 1, log = FALSE, do.other.side = TRUE)

### Arguments

`locs` | GenomicRanges to be used to draw chromosome boundaries, if necessary. Usually rowRanges slot from a GenoSet.
`side` | integer side of plot to put axis
`log` | logical Is axis logged?
`do.other.side` | logical, label non-genome side with data values at tick marks?

### Details

Label a plot with Mb, kb, bp as appropriate, using tick locations from axTicks

### Value

nothing

### See Also

Other "genome plots": `genoPlot`

### Examples

      data(genoset,package="genoset")
      genoPlot(genoPos(genoset.ds), genoset.ds[,1, "baf"])
      genomeAxis( locs=rowRanges(genoset.ds) )  # Add chromosome names and boundaries to a plot assuming genome along x-axis
      genomeAxis( locs=rowRanges(genoset.ds), do.other.side=FALSE ) # As above, but do not label y-axis with data values at tickmarks
      genomeAxis()           # Add nucleotide position in sensible units assuming genome along x-axis

[Package genoset version 1.36.0 Index]