Package: genoset
Type: Package
Title: A RangedSummarizedExperiment with methods for copy number
        analysis
Version: 1.36.0
Date: 2018-02-06
Author: Peter M. Haverty
Maintainer: Peter M. Haverty <phaverty@gene.com>
Description: GenoSet provides an extension of the RangedSummarizedExperiment
    class with additional API features. This class provides convenient and fast
    methods for working with segmented genomic data. Additionally, GenoSet provides
    the class RleDataFrame which stores runs of data along the genome for multiple
    samples and provides very fast summaries of arbitrary row sets (regions of the
    genome).
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.10), BiocGenerics (>= 0.11.3), GenomicRanges (>=
        1.17.19), SummarizedExperiment (>= 1.1.6)
Imports: S4Vectors (>= 0.13.13), GenomeInfoDb (>= 1.1.3), IRanges (>=
        2.5.12), methods, graphics
Suggests: testthat, knitr, BiocStyle, rmarkdown, DNAcopy, stats,
        BSgenome, Biostrings
Enhances: parallel
ByteCompile: TRUE
biocViews: Infrastructure, DataRepresentation, Microarray, SNP,
        CopyNumberVariation
Collate: 'genoset-class.R' 'RleDataFrame-class.R'
        'RleDataFrame-methods.R' 'bounds.R' 'ordering.R' 'plots.R'
        'rangeSummaries.R' 'segments.R' 'utils.R'
VignetteBuilder: knitr
URL: https://github.com/phaverty/genoset
Packaged: 2018-05-01 01:32:35 UTC; biocbuild
RoxygenNote: 6.0.1.9000
Roxygen: list(markdown = TRUE)
Encoding: UTF-8
NeedsCompilation: yes
Built: R 3.5.0; i386-w64-mingw32; 2018-05-01 12:06:42 UTC; windows
Archs: i386, x64
