geneplast-package {geneplast} | R Documentation

## Geneplast: an R package for evolutionary rooting and plasticity inference based on orthologous groups distribution.

### Description

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

### Details

Package: | geneplast
Type: | Package
Version: | 1.0
Date: | 2016-06-10
License: | GPL (>= 2)

R package for gene plasticity inference based on orthologous groups distribution.

### Author(s)

Rodrigo JS Dalmolin, Mauro AA Castro.

### References

Dalmolin RJS et al. Geneplast: an R package for gene plasticity inference based on orthologous groups distribution. Journal paper (in preparation).

[Package geneplast version 1.6.2 Index]