FDRsupp-class {gQTLstats} | R Documentation

## Class `"FDRsupp"`

### Description

Support for FDR computations with ciseStore instances

### Objects from the Class

Objects can be created by calls of the form `new("FDRsupp", ...)`.

### Slots

`tab`:

  Object of class `"data.frame"` a table with association scores and plug-in FDR estimates evaluated on selected score values

`FDRfunc`:

  Object of class `"function"` a function of one argument with input association score and output the corresponding FDR estimate

`FDRmodel`:

  Object of class `"gam"` that was fit to elements of `tab`

`filterUsed`:

  Object of class `"function"` a copy of the function used for filtering the store to create the FDRfunc element.

`sessinfo`:

  sessionInfo() value at time of construction

`theCall`:

  instance of class `"call"` showing call leading to construction

### Methods

getFDRfunc

  `signature(x = "FDRsupp")`: extract the FDR approximating function, a function of one (vector) argument assumed to represent association scores, evaluating to the plug-in FDR estimates corresponding to these scores

getTab

  `signature(x = "FDRsupp")`: extract the table of association scores and empirical FDR estimates

### Note

Typically the `FDRfunc` function is constructed using a smooth model relating the estimated FDR to association scores.

### Examples

    showClass("FDRsupp")

[Package gQTLstats version 1.12.0 Index]