alterationSummary {facopy} | R Documentation

## Alteration Summary

### Description

Summary of copy number calls in a `facopyInfo` object, by alteration type and chromosome arm.

### Usage

    alterationSummary(fad, filename = NULL)

### Arguments

`fad` | `facopyInfo` object with a certain study's `facopy` data.
`filename` | Optional. A character specifying the name of the file to which to output the alteration summary table.

### Details

A `data.frame` is always returned, and optionally written to a file.

### Value

A `data.frame` with alteration frequencies by arm and alteration type.

### Author(s)

David Mosen-Ansorena

### Examples

    data(myStudy) # load example study

    alterationSummary(myStudy)

[Package facopy version 1.13.0 Index]