ALLModules {eisa} | R Documentation

## ISA transcription modules for the ALL data

### Description

The Iterative Signature Algorithm (ISA) is a biclustering method. `ALLModules` and `ALLModulesSmall` are example ISA biclusters (=modules) found in the ALL data set.

### Usage

    ALLModules
    ALLModulesSmall

### Format

Both `ALLModules` and `ALLModulesSmall` are instances of the `ISAModules` class.

### Source

`ISAModules` was generated by calling `ISA` on the `ALL` data set, using the default parameters. `ISAModulesSmall` was generated the same way, but with gene threshold 2.7 and condition threshold 1.4 only.

### References

Bergmann S, Ihmels J, Barkai N: Iterative signature algorithm for the analysis of large-scale gene expression data Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Mar;67(3 Pt 1):031902. Epub 2003 Mar 11.

### See Also

The `ALL` BioConductor package.

### Examples

    data(ALLModules)
    ALLModules

[Package eisa version 1.32.0 Index]