Package: easyRNASeq
Version: 2.16.0
Date: 2018-02-23
Type: Package
Title: Count summarization and normalization for RNA-Seq data
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler
Maintainer: Nicolas Delhomme <nicolas.delhomme@umu.se>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.39.1), BiocGenerics (>= 0.25.1), BiocParallel
        (>= 1.13.1), biomaRt (>= 2.35.8), Biostrings (>= 2.47.6), DESeq
        (>= 1.31.0), edgeR (>= 3.21.6), GenomeInfoDb (>= 1.15.2),
        genomeIntervals (>= 1.35.1), GenomicAlignments (>= 1.15.6),
        GenomicRanges (>= 1.31.8), SummarizedExperiment (>= 1.9.9),
        graphics, IRanges (>= 2.13.13), LSD (>= 3.0), locfit, methods,
        parallel, Rsamtools (>= 1.31.2), S4Vectors (>= 0.17.25),
        ShortRead (>= 1.37.1), utils
Suggests: BiocStyle (>= 2.7.8), BSgenome (>= 1.39.0),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
        rmarkdown, RUnit (>= 0.4.31)
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-05-01 01:46:20 UTC; biocbuild
Built: R 3.5.0; ; 2018-05-01 11:57:22 UTC; windows
