runDE {debrowser} | R Documentation

## runDE

### Description

Run DE algorithms on the selected parameters. Output is to be used for the interactive display.

### Usage

    runDE(data = NULL, columns = NULL, conds = NULL, params = NULL)

### Arguments

`data,` | A matrix that includes all the expression raw counts, rownames has to be the gene, isoform or region names/IDs
`columns,` | is a vector that includes the columns that are going to be analyzed. These columns has to match with the given data.
`conds,` | experimental conditions. The order has to match with the column order
`params,` | all params for the DE methods

### Value

de results

### Examples

        x <- runDE()

[Package debrowser version 1.8.5 Index]