dagPeptides-class {dagLogo} | R Documentation

## Class `"dagPeptides"`

### Description

An object of class `"dagPeptides"` represents the information of peptides.

### Objects from the Class

Objects can be created by calls of the form `new("dagPeptides", data, peptides, upstreamOffset, downstreamOffset, type)`.

### Slots

`data`

  Object of class `"data.frame"` The details of the input sequences. It includes the columns: IDs, anchorAA (anchor Amino Acid), anchorPos (anchor Position), peptide (protein peptide), anchor, upstream, downstream (peptides in given upstream and downstream offset from anchor)

`peptides`

  code"matrix" The input peptides. Each column contains one peptide in that position

`upstreamOffset`

  `"numeric"` The upstream offset from anchor

`downstreamOffset`

  `"numeric"` The downstream offset from anchor

`type`

  `"charactger"` ID type of inputs

[Package dagLogo version 1.18.0 Index]