ClusterX                Fast clustering by automatic search and find of
                        density peaks
DensVM                  Density-based local maxima cluster with SVM
Rphenograph             RphenoGraph clustering
cytof_addToFCS          Add data to the original FCS files
cytof_cluster           Subset detection by clustering
cytof_clusterMtrx       Expression values by cluster
cytof_clusterPlot       Scatter plot of the cluster results
cytof_clusterStat       Statistics of the cluster results
cytof_colorPlot         Plot the data with color-coded marker values
cytof_dimReduction      Dimension reduction for high dimension data
cytof_exprsExtract      Extract the expression data from a FCS file
                        with preprocessing
cytof_exprsMerge        Merge the expression matrix from multiple FCS
                        files with preprocessing
cytof_heatmap           Heatmap plot of cluster mean value results
cytof_progression       Progression estimation of cytof expression data
cytof_progressionPlot   Progression plot
cytof_writeResults      Save the cytofkit analysis results
cytofkit                cytofkit: an integrated mass cytometry data
                        analysis pipeline
cytofkit-package        cytofkit: an integrated mass cytometry data
                        analysis pipeline
cytofkitNews            check the package update news
cytofkitShinyAPP        A Shiny APP to interactively visualize the
                        analysis results
cytofkit_GUI            Function for launching the user friendly GUI
                        client for 'cytofkit-package'
fixedLogicleParameters_GUI
                        GUI for gettting parameter for logicle
                        transformation
getParameters_GUI       GUI for marker selection
launchShinyAPP_GUI      GUI for launching shiny APP
spectral1               First Function for spectral color palette
spectral2               Second Function for spectral color palette
