cytof_colorPlot {cytofkit} | R Documentation

## Plot the data with color-coded marker values

### Description

Plot the data with color-coded marker values

### Usage

    cytof_colorPlot(data, xlab, ylab, zlab, colorPalette = c("bluered",
      "spectral1", "spectral2", "heat"), limits = c(quantile(data[, zlab], 0.02),
      quantile(data[, zlab], 0.98)), pointSize = 0.5, alpha = 1,
      removeOutlier = TRUE)

### Arguments

`data` | A dataframe containing the xlab, ylab and zlab.
`xlab` | The column name of data for x lab.
`ylab` | The column name of data for y lab.
`zlab` | The column name of data for z lab.
`colorPalette` | Color Palette.
`limits` | Range for z lab, defaults to existing min, and max set at 98th percentile value.
`pointSize` | Size of the point.
`alpha` | Transparency of point. 1 is opaque, 0 is completely transparent.
`removeOutlier` | If `TRUE`, remove the outliers.

### Value

A ggplot object.

### Examples

    x <- c(rnorm(100, mean = 1), rnorm(100, mean = 3), rnorm(100, mean = 9))
    y <- c(rnorm(100, mean = 2), rnorm(100, mean = 8), rnorm(100, mean = 5))
    c <- rnorm(300, 10, 5)
    data <- data.frame(dim1 = x, dim2 = y, marker = c)
    cytof_colorPlot(data = data, xlab = "dim1", ylab = "dim2", zlab = "marker")

[Package cytofkit version 1.12.0 Index]