cytof_writeResults {cytofkit} | R Documentation

## Save the cytofkit analysis results

### Description

Save analysis results from cytofkit main function to RData, csv files and PDF files and add them to a new copy of FCS files.

### Usage

    cytof_writeResults(analysis_results, projectName, saveToRData = TRUE,
      saveToFCS = TRUE, saveToFiles = TRUE, resultDir, rawFCSdir,
      inverseLgclTrans = TRUE)

### Arguments

`analysis_results` | Result data from output of `cytofkit`
`projectName` | A prefix that will be added to the names of result files.
`saveToRData` | Boolean value determines if results object is saved into RData file, for loading back to R and to shiny APP.
`saveToFCS` | Boolean value determines if results are saved back to FCS files, new FCS files will be generated under folder XXX_analyzedFCS.
`saveToFiles` | Boolean value determines if results are parsed and automatically saved to csv files and pdf figures.
`resultDir` | The directory where result files will be generated.
`rawFCSdir` | The directory that contains fcs files to be analysed.
`inverseLgclTrans` | If `TRUE`, inverse logicle transform the cluster cor1 and cor2 channels.

### Value

Save all results in the `resultDir`

### See Also

`cytofkit`

### Examples

    d <- system.file('extdata',package='cytofkit')
    f <- list.files(d, pattern='.fcs$', full=TRUE)
    p <- list.files(d, pattern='.txt$', full=TRUE)
    #tr <- cytofkit(fcsFile=f,markers=p,projectName='t',saveResults=FALSE)
    #cytof_write_results(tr,projectName = 'test',resultDir=d,rawFCSdir =d)

[Package cytofkit version 1.12.0 Index]