CNV.detail

Description

Combine single probe values within detail regions.

Usage

CNV.detail(object, ...)

## S4 method for signature 'CNV.analysis'
CNV.detail(object)

Arguments

Details

The median intensity per detail region is calculated. Detail regions are defined using CNV.create_anno(detail_bed=)

Value

CNV.analysis object.

Author(s)

Volker Hovestadt conumee@hovestadt.bio

Examples

# prepare
library(minfiData)
data(MsetEx)
d <- CNV.load(MsetEx)
data(detail_regions)
anno <- CNV.create_anno(detail_regions = detail_regions)

# create object
x <- CNV.fit(query = d['GroupB_1'], ref = d[c('GroupA_1', 'GroupA_2', 'GroupA_3')], anno)

# modify object
x <- CNV.bin(x)
x <- CNV.detail(x)
#x <- CNV.segment(x)

# general information
x
show(x)

# coefficients of linear regression
coef(x)

# show or replace sample name
names(x)
names(x) <- 'Sample 1'