plotContigOrder,ContigOrdering-method {contiBAIT} | R Documentation

## Plot ordering of contigs within a single linkage group.

### Description

Plot ordering of contigs within a single linkage group.

### Usage

    ## S4 method for signature 'ContigOrdering'
    plotContigOrder(contigOrder, lg = "all",
      verbose = TRUE)

### Arguments

`contigOrder` | matrix from orderAllContigs with the subdivided linkage groups and the names of the contigs to plot
`lg` | Integer specifying the linkage group by which to plot. Default is all
`verbose` | prints messages to the terminal (default is TRUE)

### Value

A ggplot object (which will be plotted automatically if not assigned).

### Examples

    #Get a data.frame of ordered contigs from cells from the same organism, aligned to the same genome

    data("exampleContigOrder")

    plotContigOrder(exampleContigOrder[[1]], lg=1)

[Package contiBAIT version 1.8.0 Index]