get.bindingsite.ranges {cobindR} | R Documentation

## convenience function to convert predicted binding sites to GRanges object.

### Description

Function converts predicted binding sites into a GRanges object (package: GenomicFeatures). This allows for easy interaction with other tools as well as output of different formats (bed, gff).

### Usage

    get.bindingsite.ranges(x, ...)

### Arguments

`x` | An object of the class "cobindr", which will hold the predicted binding site locations.
`...` | optional additional parameters

### Value

A GRanges object holding the positions of all predicted transcription factor binding sites relative to the input sequence.

### Author(s)

Robert Lehmann <r.lehmann@biologie.hu-berlin.de>

### See Also

get.pairs write.bindingsites write.bindingsites.table

### Examples

    # export(get.bindingsite.ranges(runObj), "tfbs_hits.gff3")

[Package cobindR version 1.18.0 Index]