threshold {cobindR} | R Documentation

## threshold used in motif hit finding

### Description

threshold used in motif hit finding

### Usage

    ## S4 method for signature 'configuration'
    threshold(x)
    ## S4 replacement method for signature 'configuration,numeric'
    threshold(x) <- value

### Arguments

`x` | a cobindR configuration object
`value` | the hit threshold

### Value

threshold (numeric)

### Author(s)

Rob Lehmann <r.lehmann@biologie.hu-berlin.de>

### See Also

`id`,`experiment_description`,`sequence_source`,`sequence_origin`,`sequence_type`,`bg_sequence_source`,`bg_sequence_origin`,`bg_sequence_type`,`species`,`downstream`,`upstream`,`max_distance`,`pairs`,`pfm_path`,`threshold`,`fdrThreshold`,`path`,`mart`,`pValue`

### Examples

    cfg <- cobindRConfiguration()
    threshold(cfg)

[Package cobindR version 1.18.0 Index]