plot.positionprofile {cobindR} | R Documentation

## function to plot a profile over the total number of predicted transcription factor binding sites for each PWM.

### Description

plot.positionprofile provides position-wise profile plot over total number of predicted TFBS for each PWM over all input sequences. Windowing is used to provide a smoother appreance, the window size can be adjusted with the window parameter.

### Usage

    ## S4 method for signature 'cobindr'
    plot.positionprofile(x, wind.len = 50)

### Arguments

`x` | an object of the class "cobindr", which will hold all necessary information about the sequences and the hits.
`wind.len` | integer, defining the length of the window for counting the hits.

### Author(s)

Robert Lehmann <r.lehmann@biologie.hu-berlin.de>

### See Also

`plot.positions`

[Package cobindR version 1.18.0 Index]