SeqObj-class {cobindR} | R Documentation

## Class `"SeqObj"`

### Description

Container for DNA sequence and its meta-data.

### Objects from the Class

Objects can be created by calls of the form `new("SeqObj", seq, id, species, name, comment, location)`.

### Slots

`uid`:

  Object of class `"character"` ~~ unique id for internal representation

`name`:

  Object of class `"character"` ~~ biological reference name, if available

`species`:

  Object of class `"character"` ~~ reference species

`location`:

  Object of class `"character"` ~~ location on the reference genome

`comment`:

  Object of class `"character"` ~~ comments and notes

`sequence`:

  Object of class `"DNAString"` ~~ the sequence

### Methods

initialize

  `signature(.Object = "SeqObj")`: ...

rtfbs.intern

  `signature(object = "SeqObj")`: ...

write.fasta

  `signature(sequences = "SeqObj")`: ...

### Author(s)

Manuela Benary <manuela.benary@cms.hu-berlin.de>

### See Also

`cobindr` `configuration`

### Examples

    showClass("SeqObj")

[Package cobindR version 1.18.0 Index]