miRNATargetRegionsBiomart_ENSEMBL {coMET} | R Documentation

## Creates a track of miRNA target regions from ENSEMBL

### Description

Creates a track of miRNA target regions from ENSEMBL using the Gviz bioconductor package.

### Usage

    miRNATargetRegionsBiomart_ENSEMBL(gen, chr, start, end, showId=FALSE,
    datasetEnsembl = "hsapiens_mirna_target_feature",
    title="miRNA Target Regions ENSEMBL")

### Arguments

`gen` | The name of the genome. Currently only handles human data from either the previous version, GRCh37 (also known as hg19) or the current version, GRCh38 (also known as hg38).
`chr` | The chromosome of interest
`start` | The starting position in the region of interest (the smallest value)
`end` | The end position in the region of interest (the largest value)
`showId` | Show the ID of the genetic elements
`datasetEnsembl` | Allows the user to manually set which data set is used if required.Default=hsapiens_mirna_target_feature
`title` | The name of the annotation track

### Value

An AnnotationTrack object of Gviz

### Author(s)

Tiphaine Martin

Tom Hardiman

### References

http://bioconductor.org/packages/release/bioc/html/Gviz.html

Got to ENSEMBLregulation binding motif biomart

### Examples

    library("Gviz")
    gen <- "hg38"
    chr <- "chr1"
    start <- 1000000
    end <- 20000000

    if(interactive()){
     miRNATargetRegionsBiomartTrack<-miRNATargetRegionsBiomart_ENSEMBL(gen,chr,start,end,
                                          datasetEnsembl = "hsapiens_mirna_target_feature")
      plotTracks(miRNATargetRegionsBiomartTrack, from = start, to = end)
    } else {
      data(miRNATargetRegionsBiomartTrack)
      plotTracks(miRNATargetRegionsBiomartTrack, from = start, to = end)
    }

[Package coMET version 1.12.0 Index]