regulationBiomart_ENSEMBL {coMET} | R Documentation

## Create a regulation track from ENSEMBL

### Description

Create a 'Regulation' track from ENSEMBL using the Gviz bioconductor package

### Usage

    regulationBiomart_ENSEMBL(gen, chr, start, end,title="Regulation ENSEMBL")

### Arguments

`gen` | the name of the genome
`chr` | the chromosome of interest
`start` | the first position in the region of interest (the smallest value)
`end` | the last position in the region of interest (the largest value)
`title` | Name of tracks

### Value

An AnnotationTrack object of Gviz

### Author(s)

Tiphaine Martin

### References

http://bioconductor.org/packages/release/bioc/html/Gviz.html

Got to ENSEMBLregulation biomart

### Examples

    library("Gviz")
    gen <- "hg19"
    chr <- "chr7"
    start <- 38290160
    end <- 38303219

    if(interactive()){
      regulationENSEMBLtrack<-regulationBiomart_ENSEMBL(gen,chr,start,end)
      plotTracks(regulationENSEMBLtrack, from = start, to =end)
    } else {
      data(regulationENSEMBLtrack)
      plotTracks(regulationENSEMBLtrack, from = start, to =end)
    }

[Package coMET version 1.12.0 Index]