transcript_ENSEMBL {coMET} | R Documentation

## Create a track of transcripts from ENSEMBL

### Description

Create a track to visualize different transcripts from ENSEMBL using the Gviz bioconductor package

### Usage

    transcript_ENSEMBL(gen, chr, start, end,showId = FALSE, title="transcripts ENSEMBL")

### Arguments

`gen` | the name of the genome
`chr` | the chromosome of interest
`start` | the first position in the region of interest (the smallest value)
`end` | the last position in the region of interest (the largest value)
`showId` | Show the ID of the genetic elements
`title` | Name of tracks

### Value

A BiomartGeneRegionTrack object of Gviz

### Author(s)

Tiphaine Martin

### References

http://bioconductor.org/packages/release/bioc/html/Gviz.html

http://genome-euro.ucsc.edu/cgi-bin/hgTrackUi?hgsid=202839739_2hYQ1BAOuBMAR620GjrtdrFAy6dn&c=chr6&g=ensGene

### See Also

`ISCA_UCSC`, `GWAScatalog_UCSC`, `knownGenes_UCSC`, `genesName_ENSEMBL`, `GeneReviews_UCSC`, `GAD_UCSC`, `genes_ENSEMBL`, `xenorefGenes_UCSC`,

### Examples

    library("Gviz")
    gen <- "hg19"
    chr <- "chr2"
    start <- 32290160
    end <- 33303219

    if(interactive()){
      transENSMBLtrack<-transcript_ENSEMBL(gen,chr,start,end,showId=TRUE)
      plotTracks(transENSMBLtrack, from=start, to=end)
    } else {
      data(transENSMBLtrack)
      plotTracks(transENSMBLtrack, from=start, to=end)
    }

[Package coMET version 1.12.0 Index]