normalizeSor {cn.farms} | R Documentation

## Runs the SOR normalization on microarray data

### Description

Runs the SOR normalization on microarray data

### Usage

    normalizeSor(filenames, cores = 1, annotDir = NULL, alleles = FALSE,
      runtype = "ff", cyc = 5, pkgname = NULL, saveFile = "Sor")

### Arguments

`filenames` | an absolute path of the CEL files
`cores` | cores
`annotDir` | annotDir
`alleles` | alleles
`cyc` | states the number of cycles for the EM algorithm.
`runtype` | Mode how the results are saved. Possible values are ff or bm. If ff is chosen the data will not be saved automatically. With bm the results will be saved permanently.
`pkgname` | Optional parameter for the CEL mapping.
`saveFile` | Name of the file to save.

### Value

An instance of `ExpressionSet`

### Author(s)

Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at

[Package cn.farms version 1.28.0 Index]