plotEvalIc {cn.farms} | R Documentation

## Creates a plot with known regions and a numeric vector

### Description

Creates a plot with known regions and a numeric vector

### Usage

    plotEvalIc(object, segments, chrom, variable, ylim, ylab = "CN indicator",
      stripCol = "lightgray", regionCol = rgb(130, 0, 139, maxColorValue = 255),
      pointSize = 0.75, pointType = 4, bandwidth = c(0.01, 1000),
      nbin = 100)

### Arguments

`object` | an instance of `ExpressionSet`
`segments` | A data.frame with known regions.
`chrom` | the chromosome.
`variable` | The numeric vector which should be plotted.
`ylim` | the limits of the y axis.
`ylab` | the ylab from function par.
`stripCol` | color of points.
`regionCol` | color of regions.
`pointSize` | size of the points.
`pointType` | type of the points.
`bandwidth` | for the color of the plot.
`nbin` | number of bins for the coloring.

### Value

Some data

### Author(s)

Andreas Mitterecker

### Examples

    load(system.file("exampleData/slData.RData", package = "cn.farms"))
    load(system.file("exampleData/testSegments.RData", package = "cn.farms"))
    plotEvalIc(slData, fData(testSegments),
         variable = assayData(slData)$L_z[, 1], 23)

[Package cn.farms version 1.28.0 Index]