summarizeWindowStd {cn.farms} | R Documentation

## Combines neighbouring locations to windows

### Description

Combines neighbouring locations to windows

### Usage

    summarizeWindowStd(phInf, windowSize = 3, overlap = TRUE)

### Arguments

`phInf` | The locations on the chromosomes.
`windowSize` | Size of how many Locations should be combined.
`overlap` | States if the windows should overlap.

### Value

Indices for summarization

### Author(s)

Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at

### Examples

    ## create toy physical data
    sizeTmp <- 30
    phInf <- data.frame(
            chrom = rep("15", sizeTmp),
            start = seq(from = 1, by = 300, length.out = sizeTmp),
            end = seq(from = 3600, by = 300, length.out = sizeTmp),
            man_fsetid = paste("SNP_A-", seq(sizeTmp)+1000, sep = ""))
    summarizeWindowStd(phInf)

[Package cn.farms version 1.28.0 Index]