pReciprocalOverlap {chromswitch} | R Documentation

## pReciprocalOverlap

### Description

If a and b denote two genomic regions, check whether they overlap reciprocally by `p`*100

### Usage

    pReciprocalOverlap(a, b, p)

### Arguments

`a` | GRanges object storing first region
`b` | GRanges object storing second region
`p` | Numeric value in [0, 1] giving the fraction of reciprocal overlap to require.

### Value

Logical value, TRUE if `a` and `b` are the same by having a p-reciprocal overlap, FALSE otherwise

### Examples

    a <- GRanges(seqnames = "chr11",
                 ranges = IRanges(start = 112829468, end = 112834468))
    b <- GRanges(seqnames = "chr11",
                 ranges = IRanges(start = 112829468, end = 113834468))

    pReciprocalOverlap(a, b, 0.9)

[Package chromswitch version 1.2.1 Index]