heatmapCountCorrelation {chromstaR} | R Documentation

## Read count correlation heatmap

### Description

Heatmap of read count correlations (see `cor`).

### Usage

    heatmapCountCorrelation(model, cluster = TRUE)

### Arguments

`model` | A `multiHMM` or `combinedMultiHMM` object or file that contains such an object.
`cluster` | Logical indicating whether or not to cluster the heatmap.

### Value

A `ggplot` object.

### See Also

`plotting`

### Examples

    ## Get an example multiHMM ##
    file <- system.file("data","multivariate_mode-combinatorial_condition-SHR.RData",
                        package="chromstaR")
    model <- get(load(file))
    ## Plot count correlations as heatmap
    heatmapCountCorrelation(model)

[Package chromstaR version 1.6.2 Index]