s2 {chroGPS} | R Documentation

## Sample binding site and related data from S2 and BG3 cell lines in Drosophila melanogaster.

### Description

chroGPS example dataset including ChIP-CHIP (modEncode) and ChIP-Seq (NCBI GEO GSE19325) data for Drosophila melanogaster S2 and BG3 cell lines as well as S2 wildtype gene expression values coming from Affymetrix Drosophila2 arrays. The object `toydists` stores precomputed `distGPS` objects (called `d, d2, d3`) for the epigenetic factors used in the dynamic vignette that comes with the package.

### Usage

    data(s2)

### Source

`http://www.modencode.org` `http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19325`

### References

`http://www.modencode.org` `http://www.ncbi.nlm.nih.gov/geo/`

### Examples

    data(s2)
    class(s2)
    s2
    s2names$Factor
    data(s2Seq)
    s2Seq
    # See vignette examples for several uses of these datasets.

[Package chroGPS version 1.28.0 Index]