import_fusioncatcher {chimeraviz} | R Documentation

## Import results from a Fusioncatcher run into a list of Fusion objects.

### Description

A function that imports the results from a Fusioncatcher run, typically from a final-list-candidate-fusion-genes.txt file, into a list of Fusion objects.

### Usage

    import_fusioncatcher(filename, genome_version, limit)

### Arguments

`filename` | Filename for the Fusioncatcher final-list-candidate-fusion-genes.txt results file.
`genome_version` | Which genome was used in mapping (hg19, hg38, etc.).
`limit` | A limit on how many lines to read.

### Value

A list of Fusion objects.

### Examples

    fusioncatcher833ke <- system.file(
      "extdata",
      "fusioncatcher_833ke_final-list-candidate-fusion-genes.txt",
      package = "chimeraviz")
    fusions <- import_fusioncatcher(fusioncatcher833ke, "hg38", 3)
    # This should import a list of 3 fusions described in Fusion objects.

[Package chimeraviz version 1.6.2 Index]