partner_gene_ensembl_id {chimeraviz} | R Documentation

## Get the Ensembl ID from a PartnerGene object

### Description

This getter retrieves the Ensembl ID from a PartnerGene object

This sets the Ensembl ID of a PartnerGene object.

### Usage

    partner_gene_ensembl_id(x)

    ## S4 method for signature 'PartnerGene'
    partner_gene_ensembl_id(x)

    partner_gene_ensembl_id(object) <- value

    ## S4 replacement method for signature 'PartnerGene'
    partner_gene_ensembl_id(object) <- value

### Arguments

`x` | The PartnerGene object you wish to retrieve the Ensembl ID for.
`object` | The PartnerGene object you wish to set a new Ensembl ID for.
`value` | The new Ensembl ID.

### Value

The upstream fusion partner gene Ensembl ID.

### Examples

    # Load data
    defuseData <- system.file(
      "extdata",
      "defuse_833ke_results.filtered.tsv",
      package="chimeraviz")
    fusions <- import_defuse(defuseData, "hg19", 1)
    fusion <- fusions[[1]]
    # Get the Ensembl ID from the upstream fusion partner gene
    partner_gene_ensembl_id(upstream_partner_gene(fusion))

    # Load data
    defuseData <- system.file(
      "extdata",
      "defuse_833ke_results.filtered.tsv",
      package="chimeraviz")
    fusions <- import_defuse(defuseData, "hg19", 1)
    fusion <- fusions[[1]]
    # Set the downstream PartnerGene object to be the same as the upstream PartnerGene object
    partner_gene_ensembl_id(upstream_partner_gene(fusion)) <- "test"

[Package chimeraviz version 1.6.2 Index]