import_soapfuse {chimeraviz} | R Documentation

## Import results from a SOAPfuse run into a list of Fusion objects.

### Description

A function that imports the results from a SOAPfuse run, typically from a final.Fusion.specific.for.genes file, into a list of Fusion objects.

### Usage

    import_soapfuse(filename, genome_version, limit)

### Arguments

`filename` | Filename for the SOAPfuse final-list-candidate-fusion-genes.txt results file.
`genome_version` | Which genome was used in mapping (hg19, hg38, etc.).
`limit` | A limit on how many lines to read.

### Value

A list of Fusion objects.

### Examples

    soapfuse833ke <- system.file(
      "extdata",
      "soapfuse_833ke_final.Fusion.specific.for.genes",
      package = "chimeraviz")
    fusions <- import_soapfuse(soapfuse833ke, "hg19", 3)
    # This should import a list of 3 fusions described in Fusion objects.

[Package chimeraviz version 1.6.2 Index]