showBioMatrixPlotLayout {caOmicsV} | R Documentation

## Display caOmicsV bioMatrix Layout

### Description

Display caOmicsV bioMatrix layout with default information for each plot area for purpose of optimizing the layout. A bioMatrix layout must be initialized first.

### Usage

        showBioMatrixPlotLayout(geneNames, sampleNames, phenotypes,
                secondGeneNames,  sampleColors=NULL, geneColors=NULL,
                phenoColors=NULL)

### Arguments

`geneNames` | character vector, gene names shown at left side of omics data plot area
`sampleNames` | character vector, sample names shown on the top of phenotype plot area
`phenotypes` | character vector, phenotype names listed on left side of phenotype plot area
`secondGeneNames` | character vector, second gene names shown at right side of omics data area
`sampleColors` | character vector for color name(s) of R color specification for samples
`geneColors` | character vector of color name or R color specification for genes
`phenoColors` | character vector of color name(s) or R color specification for phenotypes

### Value

None

### Author(s)

Henry Zhang

### Examples

        initializeBioMatrixPlot(numOfGenes=1, numOfSamples=50)
        showBioMatrixPlotLayout(geneNames="Gene",
                sampleNames=paste("Sample", 1:50),
                phenotypes="Diagnosis", secondGeneNames="miRNA")

[Package caOmicsV version 1.10.0 Index]