initializeBioMatrixPlot {caOmicsV} | R Documentation

## Set Up Parameters for caOmicsV bioMatrix Plot Layout

### Description

Initialize parameters for caOmicsV bioMatrix layout to set up plot area size and item sizes.

### Usage

        initializeBioMatrixPlot(numOfGenes=100, numOfSamples=100,
            numOfPhenotypes=1, sampleHeight=0.4, sampleWidth=0.1,
            columnPadding=0.025, rowPadding=0.1, geneNameWidth=1,
            remarkWidth=1, summaryWidth=1, sampleNameHeight=1,
            legendHeight=1)

### Arguments

`numOfGenes` | non-negative numeric, total number of genes to be plotted
`numOfSamples` | non-negative numeric, total number of samples to be plotted
`numOfPhenotypes` | non-negative numeric, total number of phenotypes to be plotted
`sampleHeight` | non-negative numeric, height of rectangle area in inch for a sample plot
`sampleWidth` | non-negative numeric, width of rectangle area in inch for a sample plot
`columnPadding` | non-negative numeric, width of padding, in inch, between two rectangles (samples)
`rowPadding` | non-negative numeric, height of padding in inch between two rows (genes)
`geneNameWidth` | non-negative numeric, width of plot area in inch for gene name plot
`remarkWidth` | non-negative numeric, width of plot area in inch for second set of gene names and summary data.
`summaryWidth` | non-negative numeric, width of data plot area in inch to plot summary info in text or bars.
`sampleNameHeight` | non-negative numeric, height of plot area in inch for sample names (sample name are plotted vertically).
`legendHeight` | non-negative numeric, height of plot area in inch for legend.

### Value

None

### Author(s)

Henry Zhang

### Examples

        initializeBioMatrixPlot(numOfGenes=100, numOfSamples=100,
            numOfPhenotypes=1, sampleHeight=0.4, sampleWidth=0.1,
            columnPadding=0.025, rowPadding=0.1, geneNameWidth=1,
            remarkWidth=1, summaryWidth=1, sampleNameHeight=1,
            legendHeight=1)

[Package caOmicsV version 1.10.0 Index]