plotBioMatrixRowNames {caOmicsV} | R Documentation

## Plot Row Names on caOmicsV bioMatrix Layout

### Description

Plot row names on the left or right side of biomatrix plot area. Phenotype names, gene names, and remark notes are all plotted with this function. bioMatrix layout and graphic device must be initialized first.

### Usage

        plotBioMatrixRowNames(geneNames, areaName, colors, side="left",
                skipPlotRows=0, skipPlotColumns=0)

### Arguments

`geneNames` | character vector, row names to be plotted
`areaName` | character vector, either "omicsData" or "phenotype"
`colors` | character vector of color names or R color specification
`side` | character vector, either "left" or "right"
`skipPlotRows` | non-negative integer, total rows on plot area that should be skipped from the first row, default 0
`skipPlotColumns` | non-negative integer, columns (sampleWidth) will be skipped when plotting items on remark area

### Value

None

### Author(s)

Henry Zhang

### Examples

        initializeBioMatrixPlot(numOfGenes=20, numOfSamples=50)

        geneNames  <- paste0("gene_", 1:20)
        miRNANames <- paste0("miRNA_", 1:20)

        showBioMatrixPlotLayout(geneNames, paste("Sample", 1:50),  "Diagnosis")
        plotBioMatrixRowNames(miRNANames, areaName="omicsData", colors="blue",
                    side="right")

[Package caOmicsV version 1.10.0 Index]