plotBioNetPolygons {caOmicsV} | R Documentation

## Polygon Plot on caOmicsV bioNetCircos Layout

### Description

Plot category data as polygons on node(s) of caOmicsV bioNetCircos layout. bioNetCircos layout and graphic device must be initialized first. Polygon colours are converted from category value with build in colour series. Use getcaOmicsVColors() and setcaOmicsVColors(colorList) to see or reset customized colours.

### Usage

        plotBioNetPolygons(dataValues, outer, inner)

### Arguments

`dataValues` | matrix of character or numeric for category data
`outer` | non-negative numeric, the outer boundary of plot area from node center
`inner` | non-negative numeric, the innner boundary of plot area from node center

### Value

None

### Author(s)

Henry Zhang

### Examples

        data(bionetPlotDemoData)
        expr <- bionetPlotDemoData$heatmapData[[1]]
        bioNet <- bc3net(expr)

        initializeBioNetCircos(bioNet, totalSamples=60)
        showBioNetNodesLayout()
        dataValues <- matrix(rep(c(1:3), each=20), nrow=1)
        plotBioNetPolygons(dataValues, outer=3, inner=2)

[Package caOmicsV version 1.10.0 Index]