Package: branchpointer
Type: Package
Title: Prediction of intronic splicing branchpoints
Version: 1.6.0
Date: 2017-07-14
Author: Beth Signal
Maintainer: Beth Signal <b.signal@garvan.org.au>
Description: Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.
License: BSD_3_clause + file LICENSE
LazyData: FALSE
Depends: caret, R(>= 3.4)
Imports: plyr, kernlab, gbm, stringr, cowplot, ggplot2, biomaRt,
        Biostrings, parallel, utils, stats,
        BSgenome.Hsapiens.UCSC.hg38, rtracklayer, GenomicRanges,
        GenomeInfoDb, IRanges, S4Vectors, data.table
Suggests: knitr, BiocStyle
RoxygenNote: 6.0.1
VignetteBuilder: knitr
biocViews: Software, GenomeAnnotation, GenomicVariation,
        MotifAnnotation
NeedsCompilation: no
Packaged: 2018-05-01 04:03:48 UTC; biocbuild
Built: R 3.5.0; ; 2018-05-01 11:38:03 UTC; windows
