bamsignals {bamsignals} | R Documentation

## Efficient counting of reads in a bam file

### Description

Functions and classes for extracting signals from a bam file. Differently than the other packages, this package is not supposed to import reads in R. All the read-processing is done in C/C++ and the only output are read counts.

### Author(s)

Alessandro Mammana mammana@molgen.mpg.de

Johannes Helmuth helmuth@molgen.mpg.de

### See Also

`bamsignals-methods` for the functions and `CountSignals` for the class.

[Package bamsignals version 1.12.1 Index]