texpr {ballgown} | R Documentation

## extract transcript-level expression measurements from ballgown objects

### Description

extract transcript-level expression measurements from ballgown objects

### Usage

    texpr(x, meas = "FPKM")

    ## S4 method for signature 'ballgown'
    texpr(x, meas = "FPKM")

### Arguments

`x` | a ballgown object
`meas` | type of measurement to extract. Can be "cov", "FPKM", or "all". Default "FPKM".

### Value

transcript-by-sample matrix containing expression values (measured by `meas`). If `meas` is `"all"`, a data frame is returned, containing all measurements and location information.

### Examples

    data(bg)
    transcript_fpkm_matrix = texpr(bg)
    transcript_data_frame = texpr(bg, 'all')

[Package ballgown version 2.12.0 Index]