homoData-class {annotate} | R Documentation

## Class "homoData"

### Description

A class to present data for HomologGene data of a matching sequence

### Objects from the Class

Objects can be created by calls of the form `new("homoData", ...)`.

### Slots

`homoOrg`:

  Object of class `"character"` the scientific name of the organism of interest

`homoLL`:

  Object of class `"numeric"` the LocusLink id of the gene of interest

`homoType`:

  Object of class `"character"` the type of similarity. Valid values include B - a recipiprocal best best between 3 or more organisms, b - a reciprocal best match, and c - a curated homology relationship

`homoPS`:

  Object of class `"numeric"` percent similarity value

`homoURL`:

  Object of class `"character"` the URL for curated homology relationship

`homoACC`:

  Object of class `"character"` the accession number

`homoHGID`:

  Object of class `"numeric"` the internal HomologGeneID

### Methods

homoPS

  `signature(object = "homoData")`: the get function for slot `homoPS`

homoLL

  `signature(object = "homoData")`: the get function for slot `homoLL`

homoOrg

  `signature(object = "homoData")`: the get function for slot `homoOrg`

homoType

  `signature(object = "homoData")`: the get function for slot `homoType`

homoURL

  `signature(object = "homoData")`: the get function for slot `homoURL`

homoACC

  `signature(object = "homoData")`: the get function for slot `homoACC`

homoHGID

  `signature(object = "homoHGID")`: the get function for slot `homoHGID`

### Author(s)

Jianhua Zhang

### References

ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README

### Examples

        new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins",
    homoType = "B", homoURL = "", homoHGID = 12345)

[Package annotate version 1.58.0 Index]