goodBaseQuality {amplican} | R Documentation

## Filters out sequences which have bad base quality readings.

### Description

Filters out sequences which have bad base quality readings.

### Usage

    goodBaseQuality(reads, min = 20)

### Arguments

`reads` | (ShortRead object) Loaded reads from fastq.
`min` | (numeric) This is the minimum quality that we accept for every nucleotide. For example, if we have a sequence with nucleotides which have quality 50-50-50-50-10, and we set the minimum to 30, the whole sequence will be a bad sequence. The minimum is set to 0 by default.

### Value

(boolean) Logical vector with the valid rows as TRUE.

[Package amplican version 1.2.1 Index]