6f10cbb8b89f5c6f89fd0a3d2ce24625 *DESCRIPTION
8bd6afcf8e152dc9999d9066707cc81a *INDEX
04202b95e0fd2f1d1d033f29bcc3b556 *Meta/Rd.rds
b461d039a15878ed1ef2c998955511c3 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
3992e6d8da62322f9b5da7c8461455a3 *Meta/hsearch.rds
8e20a01e9cc1aaac1a003f565f000c76 *Meta/links.rds
c24deb9ed8daeaee2b64f4b4ea68f1c5 *Meta/nsInfo.rds
2120209b2da58af0b27c67a6baa36a72 *Meta/package.rds
8eaf82360f37b77cda547400f2835c29 *Meta/vignette.rds
4c7211b722651c56723f769fd74ef39a *NAMESPACE
302eb74005d4628313dd72f235ada0c6 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantTools
0e913c155876e486bb3ebca079543297 *R/VariantTools.rdb
8d8c32eb3e5001e0d10c2e6699ded8ec *R/VariantTools.rdx
147b05616262b8b0605ad82917fe8c23 *data/vignette.rda
8d5ddf1aee747bfe9f75ad0ffc3f13e3 *doc/VariantTools.R
b7f9d4a21e2fe40fe4373ba070ec12c4 *doc/VariantTools.Rnw
a66c1b4a4cd2638a596ce18f87045513 *doc/VariantTools.pdf
e502007f6e906fa8467344cec2f4e1b6 *doc/fig/VariantCallingProcess.pdf
e6a9a9d24613ddbf590543bc5ebeac0d *doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf
0ea34819326314eae4c6b9d5f4ee9dbe *doc/fig/bar-fdr-cov-bin-merged-all.pdf
1c91bbadcef2b6cba06c5d9b328ba192 *doc/fig/bar-fnr-cov-bin-merged-all.pdf
380b2a619aefe23bd017320b0f05540f *doc/fig/boxplot-altFraction.pdf
34a468a845bb92d33e20533d70da349b *doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf
dc08e35af067169253e263d844fbc13f *doc/fig/boxplot-obs-freq-sample-ceu-all.pdf
a6d1a91d902b823ea49e3533087adc3a *doc/fig/density-altFraction.pdf
9081576fb3392c333fa126ad4557c53a *doc/fig/dot-percent-recovered-caller-merged-20-all.pdf
31b854f38096fba1546ecf0124be1101 *doc/fig/errors.pdf
ff7f4e378ea15116c447180c721ed35c *doc/fig/hist-fdr-rep-count-all.pdf
cafe8bda6b95fb9dd48a1f3dcd14fca3 *doc/fig/igv_high_cov_neg.png
72c5d2679455c4913dfc6c684c2839e2 *doc/fig/mix.pdf
5192ba8e79d29bf7c9f7f2008dd7aa98 *doc/fig/post-filters.pdf
c81e6de4687156b4883bdefed5c79edb *doc/fig/variant-calling-filters.pdf
8360dff4ce73e85ebe879d662a8da062 *doc/fig/workflow.pdf
a6d9c0aa068f83ee474249201946c09f *doc/index.html
04f3442396ed48d6be465606e784d7ca *doc/tutorial.org
e18d1dc09c30c968212c5bef7d5dd6da *doc/tutorial.pdf
e372e3b655282fec0a7ca5f149509595 *help/AnIndex
4032840285ce9fd7e4ac447f8dae2754 *help/VariantTools.rdb
e563021b0413f439b9875a02e8e7b514 *help/VariantTools.rdx
122fdf00f971d29df5b2479c7b048abb *help/aliases.rds
3b9ee629625189e43beebe28f719a82b *help/paths.rds
49bce67b3d9e3837864333fbd8ea86ed *html/00Index.html
06c694458ac1a2909c42fb4ea615c0eb *html/FilterConstructors.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
853d308e95eb2ce51a568096cc6ed6e7 *html/annnotateWithControlDepth.html
b45f180ac640653968f493d10729c632 *html/callGenotypes.html
ba62b0b50c7d43850c6fb62c13cee992 *html/callSampleSpecificVariants.html
606a011a22a2e930f2ebb49394abc62b *html/callVariants.html
6f4bf2e5b5fc74ac584da199f3f83234 *html/callWildtype.html
e433df4eaa6f903f0d8aa6f53cd59052 *html/concordance.html
cc55c94c8f3ad508bdd3695292e8650a *html/extractCoverageForPositions.html
ed71e09d8ecb84d378638a9579ea78fb *html/matchVariants.html
a5bfccb10d2a7af356c721bc747a9237 *html/pileupVariants.html
c3d5b5c7088f2f62f70fa2804777b608 *html/postFilterVariants.html
e623e6c56b1c6039aee6889238e2d44e *html/qaVariants.html
d39801a6ab40e688d7b543aa028739e7 *html/tallyVariants.html
7f97c30b3b5505c97ff06e81539d0909 *html/variantGR2Vcf.html
b842d0b98c4c9cbc247c2ad3504b9008 *html/vignette.html
2c4749f07b3615e481b4df89ca88d34d *unitTests/test_calculateConcordanceMatrix.R
2ff6eb94487808d81e15a164c69023f1 *unitTests/test_idVerify.R
cfc6d0f068fbd1c0cf8017e5aae89743 *unitTests/test_variantConcordance.R
a43c2278392bc452656836bbd0ceafae *vcf/header.csv
