inputToTSS {TSRchitect} | R Documentation

## inputToTSS

### Description

`inputToTSS` extracts TSS information from each attached .bam or .bed file in a tssObject object

### Usage

    inputToTSS(experimentName)

    ## S4 method for signature 'tssObject'
    inputToTSS(experimentName)

### Arguments

`experimentName` | an S4 object of class tssObject with bam files loaded

### Value

produces a GRangesList containing separate GRanges objects for each .bam file contained within experimentName, placing them them in the returned tssObject.

### Note

An example similar to the one provided can be found in the vignette (/inst/doc/TSRchitect.Rmd).

### Examples

    load(system.file("extdata", "tssObjectExample.RData",
    package="TSRchitect"))
    tssObjectExample <- inputToTSS(experimentName=tssObjectExample)

[Package TSRchitect version 1.8.9 Index]