as.joint.probs {TRONCO} | R Documentation

## as.joint.probs

### Description

Extract the joint probabilities from a TRONCO model. The return matrix is indexed with rownames/colnames which represent genotype keys - these can be resolved with function `keysToNames`. It is possible to specify a subset of events to build the matrix, a subset of models if multiple reconstruction have been performed. Also, either the observed or fit probabilities can be extracted.

### Usage

    as.joint.probs(x, events = as.events(x), models = names(x$model),
      type = "observed")

### Arguments

`x` | A TRONCO model.
`events` | A subset of events as of `as.events(x)`, all by default.
`models` | A subset of reconstructed models, all by default.
`type` | observed

### Value

The joint probabilities in a TRONCO model.

### Examples

    data(test_model)
    as.joint.probs(test_model)
    as.joint.probs(test_model, events=as.events(test_model)[5:15,])

[Package TRONCO version 2.12.0 Index]