TCGAanalyze_networkInference {TCGAbiolinks} | R Documentation

## infer gene regulatory networks

### Description

TCGAanalyze_networkInference taking expression data as input, this will return an adjacency matrix of interactions

### Usage

    TCGAanalyze_networkInference(data, optionMethod = "clr")

### Arguments

`data` | expression data, genes in columns, samples in rows
`optionMethod` | inference method, chose from aracne, c3net, clr and mrnet

### Value

an adjacent matrix

[Package TCGAbiolinks version 2.8.4 Index]