aeab950bee58fcca0c51dab3766b6a3e *CITATION
f6338512a25841b4fa4cba8913a517f7 *DESCRIPTION
eb4e7591368c76f0496fbdb16d0d016b *INDEX
455163eda942948b90677ca22c904770 *Meta/Rd.rds
edbb13a785a9a7dd822940fa67b09877 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
9ce491a99ae162afebb0579717c3c2cf *Meta/hsearch.rds
edd9318445be5000ff46d5853dae7dc0 *Meta/links.rds
637d5b8de613627e7360e45f6a732da9 *Meta/nsInfo.rds
7776e3b13d1a5b2d76c769ad21f6c56d *Meta/package.rds
b11e22a42f027f626c4ac9204887c131 *Meta/vignette.rds
4c068cc3d0d28139f5ef50700dd174bb *NAMESPACE
eee0094f742a2e898fa42f2687ae08d5 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SeqGSEA
8a6fadbfcaa4d16e8de9c10d67c25c2d *R/SeqGSEA.rdb
9c346f0a3b61fd76d6c4dc142acab7d3 *R/SeqGSEA.rdx
0de951c8acb635491137dd18ea274d3c *data/DEscore.RData
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01eb20f550590c90a09c3c66be19cfe3 *data/DSscore.RData
0dde568ce46206f2cdfd093e657ec717 *data/DSscore.perm.RData
5a0d626ab846b44901aaa12b9f059a35 *data/GS_example.RData
32415601bef23b9cd7a3f287920787e2 *data/RCS_example.RData
503f9f527192840a4197a568c15c9523 *doc/SeqGSEA.R
e1ae461c8dd63eb42cd0011451272c01 *doc/SeqGSEA.Rnw
8e582b85abb5f51f82b856b02ddfab00 *doc/SeqGSEA.pdf
afa83dbacb8ca9adc13efb1d47d56ee4 *doc/index.html
aa55e94bc8a566642e2185b96a3af157 *extdata/SC02.exonCnt.txt
0db4255cfc2712875daef3b4cad2fb30 *extdata/SC03.exonCnt.txt
a5b3f6a1fd87583872c6e125787769a0 *extdata/SC06.exonCnt.txt
46c91a7af23910fcec920eba62d31181 *extdata/SC08.exonCnt.txt
7e5ce78db9689017625c617ef766d9a7 *extdata/SC09.exonCnt.txt
50040700402df45704b7818bdaa5939c *extdata/SC11.exonCnt.txt
8e9b647d49feb3eeebf4f08cacfaa264 *extdata/SC13.exonCnt.txt
744f526772bc3c5e2339960a069fc5b9 *extdata/SC15.exonCnt.txt
9cbbedac1f57b91f4d54fcd0dcbea92e *extdata/SC19.exonCnt.txt
cf06c735cdfcd748ae4952306916f00b *extdata/SC23.exonCnt.txt
82ea07828e987a34016fd6df0a0ae8b7 *extdata/SN02.exonCnt.txt
69dbf83514ff2e35b2e049fb682598b9 *extdata/SN03.exonCnt.txt
d7d5badfedd65d3be5afc63b7b8ad767 *extdata/SN06.exonCnt.txt
4d1b6d41d721cb6e4c7568da2f374976 *extdata/SN08.exonCnt.txt
92d7d1a7b75d1553e25fd7c6716185da *extdata/SN09.exonCnt.txt
56e14a678cad226729b15bfe71ebcdb8 *extdata/SN11.exonCnt.txt
b55cbbb76d20758c07cb8acadab0bac6 *extdata/SN13.exonCnt.txt
ba8e84b422451b2cb406e271f6ecf700 *extdata/SN15.exonCnt.txt
e4de0cb79dae4a7617e82b961cba6c14 *extdata/SN19.exonCnt.txt
45b051c29bb812d73224c2e5db2e33d6 *extdata/SN23.exonCnt.txt
99a21bc95ce21d5613695746794ff2c3 *extdata/geneCounts.txt
e10c7313a4977ab1016ee89dca648b14 *extdata/gs_symb.txt
c4beb55cebd8c597c3193a087ae50783 *extscripts/count_in_exons.py
2849d48898b0f98630609b8806b285fc *extscripts/prepare_exon_annotation_ensembl.py
3fd83cc194195f2ccbff8d751d4c7463 *extscripts/prepare_exon_annotation_refseq.py
60067c24b3c2c70f9737e47a27a377a4 *help/AnIndex
51097f0ab89b428b817ca843e891b9b3 *help/SeqGSEA.rdb
71963688b9ddede912fa58477457fd9e *help/SeqGSEA.rdx
dd0277f70102f7e7632c947d45e92ee8 *help/aliases.rds
eee59496b9526c864fd078e6844d3524 *help/paths.rds
d49263624d69a27b4c44e60f5584919d *html/00Index.html
25918049be0d2d3cbbf0c11d47052583 *html/DENBStat4GSEA.html
de314f2254673867bfc4dfd405bc0e16 *html/DENBStatPermut4GSEA.html
096d28700e9aa62c077eaa42e7634d53 *html/DENBTest.html
c65632969ed6a18fe9601c998e27f7b5 *html/DEpermutePval.html
822dbdf8fe0b045dc7df4318ba8f6dce *html/DEscore.html
2683424b2d3f804f3b17dee06fed20b7 *html/DSpermute4GSEA.html
6b1bada794fe9f5c719844958405d21d *html/DSpermutePval.html
b22654cbe8657f34f1a09759a52859b4 *html/DSresultExonTable.html
5e56cdce539b7fff0fb9d15df71dc946 *html/DSresultGeneTable.html
3aa449fafcf61fccaecac3cdafdcfa45 *html/GSEAresultTable.html
bafcd43841a99c4446e7f6ae99be0fc0 *html/GSEnrichAnalyze.html
8ee3a2ba55969b7f4dd5a51fe0dd50ba *html/GS_example.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
090a33159e9db0291ab9595c79cf9f28 *html/RCS_example.html
77715a9757ade195393a1c042c1af428 *html/ReadCountSet-class.html
856c2c4cb79877cbb63e004b10deedb3 *html/SeqGSEA-package.html
b899d1936007d1feaaaaaf6bf0c6d8fa *html/SeqGeneSet-class.html
d9e1796641c788c222506ab9d7968f92 *html/calES.html
b96ffe58105f370e1838e2070ae629ab *html/calES.perm.html
41aa55bafab3d42c5345120549adacdd *html/convertEnsembl2Symbol.html
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63c93a42a5eb84f29e92b58c92d03386 *html/counts-methods.html
8799c52a359ea96318fc1d1c02b780bd *html/estiExonNBstat.html
e46f0d77d0668eb429e7765df872f407 *html/estiGeneNBstat.html
0855fb3c615535565effb01a7145ea31 *html/exonID.html
4dbbc6b2c5608dfc83a5cd4d75550ec8 *html/exonTestability.html
112718280b24f57a34695ca6ca6627f4 *html/geneID.html
b8056775248d6ca7283efefbd5f1f5df *html/geneList.html
fa55a21676ea1571a79d676fc0f292e7 *html/genePermuteScore.html
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9b52905b8f540b89a56d155be1bf1952 *html/geneSetDescs.html
0072df6e30a08cc6a5c8ce86c4c9448d *html/geneSetNames.html
b93d14847f4de8d309877f8245bba3a7 *html/geneSetSize.html
2131c8e58cab633b1b80d73f2a95afcd *html/geneTestability.html
46d51c6371771f5139b430dbf75100fe *html/genpermuteMat.html
0cee66a07a6d55f8335f3a90d1db1c68 *html/getGeneCount.html
52049736b0ba3a8480e07109eabe80cf *html/label.html
4b9b25a03f73d30d2e58754f2f36a487 *html/loadExonCountData.html
ea1ecb3b67c9cb1274165336a699f909 *html/loadGenesets.html
62e45f1714fa34d8fbc38146e34a39cc *html/newGeneSets.html
ecc910b6e5286d339cc99a3330219754 *html/newReadCountSet.html
dd5e4aadc8177bdac1a270c06d647d8f *html/normES.html
d6d7af426b8ac5019fec4836ed3d7a54 *html/normFactor.html
35bf7abcf64f1d6175003f16119d4013 *html/plotES.html
1600feda8edb3ef254e2017b56b667ab *html/plotGeneScore.html
c71dd8eac087e066c134c6af75b537e7 *html/plotSig.html
09e034b2120c561210c94f730be3bada *html/plotSigGeneSet.html
8738bf6cfaf04744fabb6480c74db001 *html/rankCombine.html
7b1d53d4049892cbb121186ca2095813 *html/runDESeq.html
49081edc5f4d0c56af797d00511f442c *html/runSeqGSEA.html
cc04af8bac094febc05c927fd426456c *html/scoreNormalization.html
8dc702c171c3715f6b2ec10dc94b0cc7 *html/signifES.html
85005fd40b41b94b1b96cc2c5b484065 *html/size.html
1deb9aa158e2cb1b227a138b1e5f55ed *html/subsetByGenes.html
013c7d4be61f2b5fbd4de24458a1776a *html/topDEGenes.html
739db7b033c2f25db970facba3003a7c *html/topDSExons.html
733e4e2a7e20fc9e22da45a3e0038211 *html/topDSGenes.html
e5d0a62e74b4f3e222fe9db3a55560e0 *html/topGeneSets.html
c68d46448e4811209d29c3ff1e802185 *html/writeScores.html
d03aec5866eec127e9ba32afd2ca33bf *html/writeSigGeneSet.html
