getGeneCount {SeqGSEA} | R Documentation

## Calculate read counts of genes from a ReadCountSet object

### Description

Calculate read counts of genes from a ReadCountSet object

### Usage

    getGeneCount(RCS)

### Arguments

`RCS` | a ReadCountSet object

### Details

This function can be used to get gene read counts from exon read counts.

### Value

a matrix of gene read counts for each gene (row) and each sample (col).

### Author(s)

Xi Wang, xi.wang@newcastle.edu.au

### See Also

`loadExonCountData`, `runDESeq`

### Examples

    data(RCS_example, package="SeqGSEA")
    geneCounts <- getGeneCount(RCS_example)

[Package SeqGSEA version 1.20.0 Index]