histone_h3k4me1 {SMITE} | R Documentation

## A toy dataset of H3k4me1 peaks to test within SMITE

### Description

A toy dataset of H3k4me1 peaks from liver ChIP-seq through the encode project. The file is a BED file.

### Usage

    data(histone_h3k4me1)

### Format

A data frame with 75448 observations on the following 3 variables.

column1

  a character vector specifying chromsome

column2

  an integer vector specifying start

column3

  an integer vector specifying end

### Details

This is a BED file that specifices the consensus locations of three H3K4me1 ChIP-seq experiments performed on normal adult liver.

### Value

A dataframe in BED format (chromosome, start, end).

### Source

GSM669972, GSM621654, GSM537706

Roadmap Epigenomics Lister R, et al. Nature. 2009 Nov 19;462(7271):315-22 ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012 Sep 6;489(7414):57-74.

### Examples

    data(histone_h3k4me1)
    head(h3k4me1)

[Package SMITE version 1.8.0 Index]