plotDensityPval {SMITE} | R Documentation

## Plot the density of the combined scores stored in a PvalueObject

### Description

This function in called by the normalizePval function, but can also be called by the user to visualize the relative densities of combined p-values (scores).

### Usage

    plotDensityPval(pvalue_annotation, ref = "expression_pvalue", ...)

### Arguments

`pvalue_annotation` | An S4 object of class PvalueAnnotation.
`ref` | A character specifying the name of the reference category. DEFAULT is "expression_pvalue"
`...` | Additional plotting arguments

### Value

Plots a multidensity plot.

### Author(s)

N. Ari Wijetunga

### Examples

    ## Load test annotation with only score data ##
    data(test_annotation_score_data)

    plotDensityPval(pvalue_annotation=test_annotation)

[Package SMITE version 1.8.0 Index]