extractModules {SMITE} | R Documentation

## View specific modules within a PvalueAnnotation

### Description

Having identfied modules within a Pvalue annotation, this function allows the user to display 1 or more of the module genes.

### Usage

    extractModules(pvalue_annotation, which_module = NULL)

### Arguments

`pvalue_annotation` | An S4 object of class PvalueAnnotation for which Spinglass or BioNet has already been run.
`which_module` | A numeric vector specifying one or more module to display

### Value

A list with each element containing the requested modules

### Author(s)

N. Ari Wijetunga

### See Also

plotModule runGOseq extractGOseq runSpinglass runBioNet

### Examples

    data(test_annotation_score_data)

    extractModules(pvalue_annotation=test_annotation, which_module=1)

[Package SMITE version 1.8.0 Index]