SIAMCAT-package	SIAMCAT-package
accessSlot	accessSlot
add.meta.pred	add.meta.pred
assign-data_split	assign-data_split
assign-eval_data	assign-eval_data
assign-features	assign-features
assign-label	assign-label
assign-meta	assign-meta
assign-model_list	assign-model_list
assign-norm_param	assign-norm_param
assign-orig_feat	assign-orig_feat
assign-physeq	assign-physeq
assign-pred_matrix	assign-pred_matrix
check.associations	check.associations
check.confounders	check.confounders
create.data.split	create.data.split
create.label.from.metadata	create.label.from.metadata
data_split	data_split-methods
data_split,ANY-method	data_split-methods
data_split,data_split-method	data_split-methods
data_split,list-method	data_split-methods
data_split-class	data_split-class
data_split<-	assign-data_split
data_split<-,siamcat,data_split-method	assign-data_split
evaluate.predictions	evaluate.predictions
eval_data	eval_data-methods
eval_data,ANY-method	eval_data-methods
eval_data,list-method	eval_data-methods
eval_data-class	eval_data-class
eval_data<-	assign-eval_data
eval_data<-,siamcat,list-method	assign-eval_data
features	features-methods
features,ANY-method	features-methods
features,otu_table-method	features-methods
features<-	assign-features
features<-,siamcat,otu_table-method	assign-features
filter.features	filter.features
filter.label	filter.label
get.component.classes	get.component.classes
get.features.matrix	get.features.matrix
get.orig_feat.matrix	get.orig_feat.matrix
label	label-methods
label,ANY-method	label-methods
label,label-method	label-methods
label,list-method	label-methods
label-class	label-class
label<-	assign-label
label<-,siamcat,label-method	assign-label
make.predictions	make.predictions
meta	meta-methods
meta,ANY-method	meta-methods
meta,sample_data-method	meta-methods
meta<-	assign-meta
meta<-,siamcat,sample_data-method	assign-meta
model.evaluation.plot	model.evaluation.plot
model.interpretation.plot	model.interpretation.plot
models	models-methods
models,ANY-method	models-methods
models,model_list-method	model_list-methods
model_list	model_list-methods
model_list,ANY-method	model_list-methods
model_list,model_list-method	model_list-methods
model_list-class	model_list-class
model_list<-	assign-model_list
model_list<-,siamcat,model_list-method	assign-model_list
model_type	model_type-methods
model_type,ANY-method	model_type-methods
model_type,model_list-method	model_list-methods
normalize.features	normalize.features
norm_param	norm_param-methods
norm_param,ANY-method	norm_param-methods
norm_param<-	assign-norm_param
norm_param<-,siamcat,list-method	assign-norm_param
orig_feat	orig_feat-methods
orig_feat,ANY-method	orig_feat-methods
orig_feat,orig_feat-method	orig_feat-methods
orig_feat,otu_table-method	label-methods
orig_feat-class	orig_feat-class
orig_feat<-	assign-orig_feat
orig_feat<-,siamcat,orig_feat-method	assign-orig_feat
orig_feat<-,siamcat,otu_table-method	assign-orig_feat
parse.label.header	parse.label.header
physeq	physeq-methods
physeq,ANY-method	physeq-methods
physeq,phyloseq-method	physeq-methods
physeq<-	assign-physeq
physeq<-,siamcat,otu_table-method	assign-physeq
physeq<-,siamcat,phyloseq-method	assign-physeq
pred_matrix	pred_matrix-methods
pred_matrix,ANY-method	pred_matrix-methods
pred_matrix,matrix-method	pred_matrix-methods
pred_matrix-class	pred_matrix-class
pred_matrix<-	assign-pred_matrix
pred_matrix<-,siamcat,matrix-method	assign-pred_matrix
read.features	read.features
read.labels	read.labels
read.meta	read.meta
reset.features	reset.features
select.samples	select.samples
show,siamcat-method	show-methods
SIAMCAT	SIAMCAT-package
siamcat	siamcat
siamcat-class	siamcat-class
siamcat_example	siamcat_example
train.model	train.model
validate.data	validate.data
