siamcat {SIAMCAT} | R Documentation

## siamcat

### Description

Function to construct an object of class siamcat-class

### Usage

    siamcat(...)

### Arguments

`...` | list of arguments needed in order to construct a SIAMCAT object

### Details

Build siamcat-class objects from their components.

### Value

A new siamcat-class object

### Examples

    # example with package data
    fn.in.feat    <- system.file('extdata',
        'feat_crc_study-pop-I_N141_tax_profile_mocat_bn_specI_clusters.tsv',
        package = 'SIAMCAT')
    fn.in.label <- system.file('extdata',
        'label_crc_study-pop-I_N141_tax_profile_mocat_bn_specI_clusters.tsv',
        package = 'SIAMCAT')
    fn.in.meta    <- system.file('extdata',
    'num_metadata_crc_study-pop-I_N141_tax_profile_mocat_bn_specI_clusters.tsv',
        package = 'SIAMCAT')

    feat    <- read.features(fn.in.feat)
    label <- read.labels(fn.in.label)
    meta    <- read.meta(fn.in.meta)
    siamcat <- siamcat(feat, label, meta)

[Package SIAMCAT version 1.0.0 Index]