select.samples {SIAMCAT} | R Documentation

## Select samples based on metadata

### Description

This functions selects labels and metadata based on a specific column in the metadata. Provided with a column-name in the metadata and a range or a set of allowed values, the function will filter the siamcat-class object accordingly.

### Usage

    select.samples(siamcat, filter, allowed.set = NULL,
    allowed.range = NULL, verbose = 1)

### Arguments

`siamcat` | an object of class siamcat-class
`filter` | string, name of the meta variable on which the selection should be done
`allowed.set` | a vector of allowed values
`allowed.range` | a range of allowed values
`verbose` | control output: `0` for no output at all, `1` for only information about progress and success, `2` for normal level of information and `3` for full debug information, defaults to `1`

### Value

an object of class siamcat-class with labels and metadata filtered in order to contain only allowed values

### Examples

        data(siamcat_example)
        # Select all samples that fall into an Age-range between 20 and 80 years
        siamcat_selected <- select.samples(siamcat_example, 'age',
        allowed.range=c(20, 80))

        # Select all samples for which information about the gender is given
        # Provide additional information with verbose
        ## Not run: siamcat_selected <- select.samples(siamcat_example, 'gender',
        allowed.set=c(1, 2), verbose=2)
    ## End(Not run)

[Package SIAMCAT version 1.0.0 Index]