exonCompatible {SGSeq} | R Documentation

## Compatible fragment counts for exons

### Description

Identify fragments compatible with exons.

### Usage

    exonCompatible(exons, spliceL, spliceR, frag_exonic, frag_intron,
      counts = TRUE)

### Arguments

`exons` | `IRanges` of exons
`spliceL` | Logical vector indicating whether LHS boundary is spliced
`spliceR` | Logical vector indicating whether RHS boundary is spliced
`frag_exonic` | `IRangesList` of exonic regions, one entry per fragment
`frag_intron` | `IRangesList` of introns, one entry per fragment
`counts` | Logical indicating whether counts or indices of compatible fragments should be returned

### Value

Counts or list of indices of compatible fragments

### Author(s)

Leonard Goldstein

[Package SGSeq version 1.14.0 Index]