rqcReadQualityBoxCalc {Rqc} | R Documentation

## Per read mean quality box plot

### Description

This function creates crate a graphic charts with box plots describing per read mean quality distribution for each input file

### Usage

    rqcReadQualityBoxCalc(rqcResultSet)

    rqcReadQualityBoxPlot(rqcResultSet)

### Arguments

`rqcResultSet` | list of `RqcResultSet` objects created by `rqc` and `rqcQA` functions.

### Value

Plot object from `ggplot` function.

### Functions

- `rqcReadQualityBoxCalc`: calculates necessary statistics

### Author(s)

Welliton Souza

### Examples

    checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
      folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
      files <- list.files(full.names=TRUE, path=folder)
      rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
    }, keep="rqcResultSet")
    rqcReadQualityBoxPlot(rqcResultSet)

[Package Rqc version 1.14.0 Index]