rnb.execute.filter.summary {RnBeads} | R Documentation

## rnb.execute.filter.summary

### Description

Calculates a table summarizing the effect of the applied filtering procedures.

### Usage

    rnb.execute.filter.summary(old.set, new.set)

### Arguments

`old.set` | Methylation dataset before filtering as an object of type inheriting `RnBSet`.
`new.set` | Methylation dataset after filtering as an object of type inheriting `RnBSet`.

### Details

This function expects that the sites and samples in `new.set` are subsets of the sites and samples in `old.set`, respectively. If this is not the case, it exists with an error.

### Value

`matrix` summarizing the number of removed and retained sites, samples, and (optionally) reliable and unreliable measurements.

### Author(s)

Yassen Assenov

### See Also

`rnb.run.preprocessing` for running the whole preprocessing module

[Package RnBeads version 1.12.1 Index]