lump.hg19 {RnBeads} | R Documentation

## LUMP Support

### Description

The sites used by the LUMP algorithm for estimating immune cell content are stored in an object named `lump.hg19`. This object should not be loaded or otherwise operated on by users. Please refer to the documentation of `rnb.execute.lump` for information on the algorithm and its implementation in RnBeads.

### Format

`lump.*` is a `list` of non-empty `integer` matrices, one per supported platform. Every `matrix` contains exactly two columns, denoting chromosome index and chromosome-based index, respectively. These indices refer to positions within the probe/site annotation table employed by RnBeads for the corresponding platform.

### Author(s)

Yassen Assenov

[Package RnBeads version 1.12.1 Index]