AssayTab-class          Class '"AssayTab"', a class for maintaing the
                        information of AssayTab
ISATab-class            Class '"ISATab"', a class for maintaing ISATab
                        information
Risa                    Risa package overview
getAnnotatedDataFrameAssay
                        Retrieves an AnnotatedDataFrameAssay.
getAssayRawDataFilenames-methods
                        ~~ Methods for Function
                        'getAssayRawDataFilenames' in Package 'Risa' ~~
getExpressionSet        Retrieves an ExpressionSet for a DNA microarray
                        assay.
getMIAMEMetadata        Retrieves the MIAME information about a
                        microarray experiment
getMSAssayFilenames     Retrieves a vector with the assay filenames
                        corresponding to mass spectrometry.
getMicroarrayAssayFilenames
                        Listing filenames of microarray-based asssay
                        from an ISAtab dataset.
getRawDataFilenames-methods
                        ~~ Methods for Function 'getRawDataFilenames'
                        in Package 'Risa' ~~
getStudyFilename        Retrieves the study filename to which an
                        assay.filename corresponds.
isMSAssay               Indicates if an assay filename corresponds to a
                        mass spectrometry assay.
isMicroarrayAssay       Determines if an assay is microarray-based or
                        not.
processAssayXcmsSet     Build an xcmsSet object given a mass
                        spectrometry assay and considering all factors
                        defined
processAssayXcmsSet.1factor
                        Build an xcmsSet object given a mass
                        spectrometry assay and considering the first
                        factor defined
readISAtab              Reads an ISAtab dataset into an R object.
suggestBiocPackage      Suggest Bioconductor pacakges
updateAssayMetadata     Update metadata into the assay file
write.ISAtab            Write an ISA-Tab dataset
write.assay.file        Write an Assay File from the ISA-Tab dataset
write.investigation.file
                        Writes the Investigation File of an ISA-Tab
                        dataset
write.study.file        Write a Study File of an ISA-Tab dataset
