80857d043e3b55271cb91476386cd4c3 *CITATION
2ac018db30b040eed6fe4a4ca466158b *DESCRIPTION
9de12d1faf0e186d8b0cd4fd885aee44 *INDEX
7b42989ffcc0e71c2e644626dfe078bc *Meta/Rd.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
1add5691ae77d8215dc45daa77cb52ad *Meta/hsearch.rds
08f3e22af6e6d727b7f098e2a98fea43 *Meta/links.rds
ec96b1ac058486cb3dbe9d73171e09c4 *Meta/nsInfo.rds
8bf30ed929f28d4d74007d88bee8654b *Meta/package.rds
119889ab5d5a9d6b57274959bf97561a *Meta/vignette.rds
35a79ab38dbab6e7c79b676116a4aff8 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/Ringo
a0ba6b142eebb3a71cbf28269743c57c *R/Ringo.rdb
3fb9373fb5a959efaeab86c1df2a3258 *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
c5eb37db0745300dbd8bb02ee3ff18e1 *agilentData/targets.txt
ac8b5e5600b8749e7c2f5bd1a84d616f *doc/Ringo.R
3839816a13a162c65bbab97c7a0986a5 *doc/Ringo.Rnw
983c2438fe4cb57569b85381235e962b *doc/Ringo.pdf
18fbaa454af6ec37d30f1798fedc3716 *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
f39530a6d35b8a18e8dd075205b37bd3 *exData/exampleProbeAnno.rda
b1f0e9e8dafc00780930776bfd6e9aa5 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
6ec1bba00f10d458b6a04793e3e9a231 *help/AnIndex
53980939de48aaf01f21bc49928f18f8 *help/Ringo.rdb
d8383a85f029fbcd59dc11be07e59bb1 *help/Ringo.rdx
8fa176953b9ce93d53e761c480f62c3a *help/aliases.rds
3158b127a9c68378eab0b11d071873ea *help/paths.rds
06b038da30ad4790d73fc7c4c17ae365 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c78673f5c3dc5944038243562ee2bfac *html/Ringo-internal.html
a5ff9342840a417ccafba52e9d658c92 *html/arrayImage.html
e666b58b2b39f0beea8da8cd09152f12 *html/asExprSet.html
31379cde30a7e509c44ce041b3eb4e79 *html/autocorr.html
fbce816657b4f70de92ea933771a8043 *html/cherByThreshold.html
133b57909507466c7b602004a0f7c4d2 *html/cherClass.html
d4a9ac8067b4bd040a8d677f875fe450 *html/chipAlongChrom.html
0b916feae9a1cb05d65987da0b3e8ee0 *html/chipAlongChromOld.html
e79485386b16f87954ea15f93615e5a4 *html/computeRunningMedians.html
de90b814510ffda024aa6530d3ffa0e8 *html/compute_gc.html
84b3f78d33ffd630aeffb400f85921b4 *html/compute_sliding_t.html
31d6d5f1b7b624377a5c7a26208c6602 *html/corrPlot.html
42bde852d2ace9afb00ceb4be117485e *html/exportCherList.html
097b90bde595e976d897303b02f4a1d9 *html/extractProbeAnno.html
b7b917f8aa6466b8e648cf5563c31076 *html/features2Probes.html
4c23246de722c7a8b3fe7e11ae2518db *html/findChersOnSmoothed.html
398fda6bfebbf4603b1fdbca77a0bdf7 *html/ftr2xys.html
ad096866a75ca41609287ccd1d7246a7 *html/getFeats.html
1508f456d48e5dfe9077c6fb887f10d3 *html/newCER.html
0d534748fe6e678544bac0d9e4902852 *html/nimblegenNorm.html
662564229d8f976579c632dc0ae3baea *html/nonzero.html
d4a008772dc4fb24bc8b39051cefbca2 *html/plotAutocorr.html
ef70bc922755939d525086ef37b08a15 *html/plotBM.html
bfc6c7d7158f60d2b66a54bcf5664990 *html/plot_cher.html
a896b6c081b18cebec3c544ff5fd6dc5 *html/posToProbeAnnoEnvironment.html
3bccd0783ab0524b09243620622c8024 *html/preprocess.html
0a606cd875dedbfd532e843bd688c2dd *html/probeAnnoClass.html
2514619865568eecc685dd164cb9f4d7 *html/qopS4.html
e459f8d04ae2c93368673ce2b79f10a4 *html/quantilesOverPositions.html
f268a6b6ed4fca317a5daa6829b84ae3 *html/readNimblegen.html
c462d79e943e59ce34e369ea5fc3f327 *html/regionoverlap.html
9290f8e8b8fc9458c8bbd911b1de76b1 *html/relateCERs.html
bca4b12870b37c208515c8c120dcc633 *html/sigGOTable.html
246ca16cdd9e864a48ebf1c66859979b *html/sliding_meansd.html
91a4c773b9c8c8ca5ad7e43037acacb8 *html/sliding_quantile.html
ff7abc1fe874e90db3dec30c6740d516 *html/twoGaussiansNull.html
92767de3d0dcacfca78345482833f61e *html/upperBoundNull.html
71b9e1fe45ad3b99f592154673b89312 *html/validProbeAnno.html
d43f30e99a0a3801d7f0d8a360c82def *libs/i386/Ringo.dll
364903d812bb25e9c329ffff6296e127 *libs/x64/Ringo.dll
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
