compareReplicaPlates {RNAither} | R Documentation

## Compare replica plates

### Description

Generates plots comparing the same plates in different experiments pairwise.

### Usage

    compareReplicaPlates(header, dataset, plotTitle, col4val, showPlot)

### Arguments

`header` | the header of a dataset file generated with `generateDatasetFile`
`dataset` | an R data frame generated with `generateDatasetFile`
`plotTitle` | the plot title
`col4val` | a character string specifying the column whose values will be used for the plot
`showPlot` | 0 or 1. 1 will open one or several plot windows in the R GUI, 0 will only save the plot(s) without opening windows

### Value

For each plate, plots of pairwise comparisons between replicate intensities are generated and saved as a pdf file named after the experiment name specified in the header concatenated with the `plotTitle` .

### See Also

`compareReplicates`

### Examples

    data(exampleHeader, package="RNAither")
    data(exampleDataset, package="RNAither")

    compareReplicaPlates(header, dataset, "Comparison of replica plate", "SigIntensity", 1)

[Package RNAither version 2.28.0 Index]