RJMCMCNucleosomes-package {RJMCMCNucleosomes} | R Documentation

## RJMCMCNucleosomes: Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)

### Description

This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.

### Author(s)

Pascal Belleau, Rawane Samb, Astrid Deschênes, Khader Khadraoui, Lajmi Lakhal and Arnaud Droit

Maintainer: Astrid Deschenes <adeschen@hotmail.com>

### See Also

- `rjmcmc` for profiling of nucleosome positions for a segment

- `rjmcmcCHR` for profiling of nucleosome positions for a large region. The function will take care of spliting and merging.

- `segmentation` for spliting a `GRanges` containing reads in a list of smaller segments for the `rjmcmc` function.

- `postTreatment` for merging closely positioned nucleosomes

- `mergeRDSFiles` for merging nucleosome information from selected RDS files.

- `plotNucleosomes` for generating a graph containing the nucleosome positions and the read coverage.

[Package RJMCMCNucleosomes version 1.4.0 Index]