109db95eb1b4072ab2573ee4f23ade1b *CITATION
128d1baa922ef1691761fc889aba3921 *DESCRIPTION
48fd35a1dbd2ce02865d24d3071c51f4 *INDEX
314a63bd28b1e42104bdc4c3a8b97425 *Meta/Rd.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
732fc5c02462b11e482cc41bcaf97007 *Meta/hsearch.rds
9c9ad440ad884b58a21399c9a25ae17f *Meta/links.rds
65dea667f4b45204a480b10f61fc7bd0 *Meta/nsInfo.rds
4abdc9f0717ba83dfe34ba627909e86a *Meta/package.rds
c96c38ad08cc7a70525bdd4393724fa3 *Meta/vignette.rds
49d1d083664ad1d9722b293e2ee397d9 *NAMESPACE
df7259a15a2300b75b200810bffe7973 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RIPSeeker
8c6d4655225a0a68595a9c5cef201950 *R/RIPSeeker.rdb
01065a9f161228d39614ae1096d42b09 *R/RIPSeeker.rdx
bf94998e897ed6fa3312594d2bf298e7 *doc/RIPSeeker.R
2f54fed1cb2a7c374d6b83778ef06672 *doc/RIPSeeker.Rnw
0e9fc756135a5e69b8223f5f58f12061 *doc/RIPSeeker.pdf
7c6476d9948a7587e22e1c0c03f6bdd7 *doc/index.html
08bb4ffc1327175d17a9a8ee80ad5b29 *extdata/PRC2/SRR039210_processed_tophat/accepted_hits_noDup_sel_chrX.bam
f35733b0cf6b993aff491129f38ad123 *extdata/PRC2/SRR039211_processed_tophat/accepted_hits_noDup_sel_chrX.bam
2e30a92bc78458afcd3fee079c0da8fb *extdata/PRC2/SRR039214_processed_tophat/accepted_hits_noDup_sel_chrX.bam
67cd63da07d23897f58d794cca23dca5 *extdata/RIPregions/RIPregion_biorep1.gff3
bd9f4a81b7b3b6aac36c49083039e594 *extdata/RIPregions/RIPregion_biorep2.gff3
7df758adaaf5b6d487ac22e4dba6c31e *extdata/pairedend/ex1.bam
3c124ff06331bf53dc2222d882769f50 *help/AnIndex
10cfd93de933d541546bed0fe6900f98 *help/RIPSeeker.rdb
e8b150d799f2446adf8e90c754506f4c *help/RIPSeeker.rdx
4c1444fc1440c7605d41db51e0538cc4 *help/aliases.rds
8ccdedef09793d6779ce9a88b1ee5ae1 *help/paths.rds
7fce999c06de1ce1fc8cf5037ffd73a2 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c9eaf996319e60b6b0b74dc205572d76 *html/RIPSeeker-package.html
d65a43de8cd621b7fc115debd1282fd6 *html/addDummyProb.html
78825edd1cd55cc842c5740502cd89b3 *html/addPseudoAlignment.html
dfcf0e909c15ddcb59aefb12dad2216a *html/annotateRIP.html
050c05fed538222f557b9a5f3cff2149 *html/binCount.html
0df4beebd9840391ce79d623e7dd1191 *html/combineAlignGals.html
078cd6df6484c171baea6fb9bb997284 *html/combineRIP.html
826d87076bddbadd414f50dcd1773bb2 *html/computeLogOdd.html
1c8526cfc2e4f8cc2da38d503e24ebcb *html/computeRPKM.html
e3facb1c8ca6266b1acc67aa0c180d8e *html/disambiguateMultihits.html
4c5209ee183ddfbf00cc3daddff8bcc4 *html/empiricalFDR.html
26242c9900dce67379d41d26ea12563e *html/evalBinSize.html
7c13e843165d4ed905a5cb5cb1f1cc1d *html/exportGRanges.html
3872068ddac7b7f076f84f1812cdf0d5 *html/galp2gal.html
faef514c9178869db59c331f1debb63d *html/getAlignGal.html
03aebf091726ae5c396d3d0b3fce70d2 *html/logScoreWithControl.html
6ea5c89bc465c01eb810251c5d064dff *html/logScoreWithoutControl.html
0d63c9b6b67a68cfa8c6dfdb52f968d8 *html/mainSeek.html
3410412c07a4f30ae7a1a4d60da560fd *html/mainSeekSingleChrom.html
ded7525162f5777e7debb0f48e555828 *html/nbh.GRanges.html
000dc4389b4059c10bb6a317fbda6d24 *html/nbh.html
837afb6c6ca7cfd08471c5fc8a066664 *html/nbh.integer.html
593e8b66ff1ed09a4148b5d12040d782 *html/nbh_chk.html
aebe54fbd3d79bc2ecd112c8af940177 *html/nbh_em.html
87ea8c12b4d1be7cc82901b4195ea680 *html/nbh_gen.html
fae6b35626c0b5288a941258390255d7 *html/nbh_init.html
24b1b587c8800d9656cc72e0f32e3493 *html/nbh_vit.html
f27c33440d17c8177395d205a829c515 *html/nbm_chk.html
223d3db0df761c8b14d66e367272d177 *html/nbm_em.html
ec7713c840d135f61c7d8e27ca56ffb7 *html/plotCoverage.html
1ec87f0d792f8780f8347cb4ff8c7e3a *html/plotStrandedCoverage.html
0b7ed8558d1ebdaa11dc25e6da0bac36 *html/randindx.html
a7a033862a71f5348ff69bec5b63d188 *html/ripSeek.html
199255d4b39b8e3973020e0f50ee4d67 *html/rulebaseRIPSeek.html
b3f201132f440eba587acacf59b53c0b *html/scoreMergedBins.html
5fedc3ef7eb768fcd5e655644122b8af *html/seekRIP.html
20302131a7af2d6f1c83ee9fe44c6dfc *html/selectBinSize.html
481663d7f0229eef1b9edc7d8c0870dd *html/statdis.html
b4acabbe6b55ac2f27f2c9e9d9432fc9 *html/viewRIP.html
