RCyjs-class {RCyjs} | R Documentation

## Create an RCyjs object

### Description

The RCyjs class provides an R interface to cytoscape.js, a rich, interactive, full-featured, javascript network (graph) library. One constructs an RCyjs instance on a specified port (default 9000), the browser code is loaded, and a websocket connection opened.

### Usage

    RCyjs(portRange = 16000:16100, title = "RCyjs", graph = graphNEL(),
      quiet = TRUE)

### Arguments

`portRange` | The constructor looks for a free websocket port in this range. 16000:16100 by default
`title` | Used for the web browser window, "RCyjs" by default
`graph` | a Biocondcutor graphNEL object
`quiet` | A logical variable controlling verbosity during execution

### Value

An object of the RCyjs class

### Examples

    if(interactive()){
      g <- simpleDemoGraph()
      rcy <- RCyjs(title="rcyjs demo", graph=g)
      setNodeLabelRule(rcy, "label");
      setNodeSizeRule(rcy, "count", c(0, 30, 110), c(20, 50, 100));
      setNodeColorRule(rcy, "count", c(0, 100), c(colors$green, colors$red), mode="interpolate")
      redraw(rcy)
      layout(rcy, "cose")
      }

[Package RCyjs version 2.2.2 Index]