bootstrapResults {PureCN} | R Documentation

## Bootstrapping variant fits

### Description

This function bootstraps variants, then optionally re-ranks solutions by using the bootstrap estimate of the likelihood score, and then optionally removes solutions that never ranked high in any bootstrap replicate.

### Usage

    bootstrapResults(res, n = 500, top = NULL, reorder = FALSE)

### Arguments

`res` | Return object of the `runAbsoluteCN` function.
`n` | Number of bootstrap replicates.
`top` | Include solution if it appears in the top `n` solutions of any bootstrap replicate. If `NULL`, do not filter solutions.
`reorder` | Reorder results by bootstrap value.

### Value

Returns a `runAbsoluteCN` object with added bootstrap value to each solution. This value is the fraction of bootstrap replicates in which the solution ranked first.

### Author(s)

Markus Riester

### See Also

`runAbsoluteCN`

### Examples

    data(purecn.example.output)
    ret.boot <- bootstrapResults(purecn.example.output, n=100)
    plotAbs(ret.boot, type="overview")

[Package PureCN version 1.10.0 Index]