toPermTest {ProCoNA} | R Documentation

## toPermTest

### Description

Uses the procona network object, the data with peptides as columns, samples in rows. And the power that the net was built at the number of permutations to do... Modules are permuted and mean topological overlap is recorded, constructing the null. The number of random permutations with mean TO greater than observed provides the p-value.

### Usage

    toPermTest(pnet, numPermutes)

### Arguments

`pnet` | ProCoNA network object.
`numPermutes` | The number of permutations to perform

### Value

returns the network obj with the perm test

### Author(s)

David L Gibbs

### Examples

    data(ProCoNA_Data)
    #net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
    toPermTest(net1, 100)

[Package ProCoNA version 1.18.0 Index]