getFisherMatrix {ProCoNA} | R Documentation

## getFisherMatrix

### Description

Fisher's exact test pairwise on modules.

### Usage

    getFisherMatrix(peps1, peps2, colors1, colors2)

### Arguments

`peps1` | Names of entities in the network (nodes of network 1)
`peps2` | Names of entities in the network (nodes of network 2)
`colors1` | the module assignments for network 1
`colors2` | the module assignments for network 2

### Value

Returns the fisher test pvalues and count of overlapping peptides.

### Author(s)

David L Gibbs

### Examples

    data(ProCoNA_Data)
    #net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
    #net2 <- buildProconaNetwork("peptide network", peptideData + 0.3*rnorm(length(peptideData)), pow=12)
    getFisherMatrix(peptides(net1), peptides(net2), mergedColors(net1), mergedColors(net2))

[Package ProCoNA version 1.18.0 Index]