goStatTest {ProCoNA} | R Documentation

## goStatTest

### Description

Wrapper function to run the hyperGTest from package GOstats, after mapping each peptide to an entrez ID.

### Usage

    goStatTest(pnet, module, pepinfo, pepColName, protColName, universe,
        onto, annot, pvalue, cond)

### Arguments

`pnet` | Procona network object.
`module` | Module of interest (numeric)
`pepinfo` | The mass tag info, mapping peptides to proteins.
`pepColName` | Column name in mass tag info for peptides
`protColName` | Column name in mass tag info for proteins
`universe` | Table mapping protein IDs to entrez IDs
`onto` | The ontology catagory (bp etc)..
`annot` | The annotation database to use
`pvalue` | pvalue cutoff
`cond` | conditional parameter, see GOstats.

### Value

Returns the results of the hyper geometric test.

### Author(s)

David L Gibbs

### Examples

    ## Not run:
    data(ProCoNA_Data)
    #net1 <- buildProconaNetwork("peptide network", peptideData, pow=12)
    goStatTest(net1, 1, masstagdb, "Mass_Tag_ID", "Reference", universe, "BP", "org.Mm.eg.db", 0.005, FALSE)

    ## End(Not run)

[Package ProCoNA version 1.18.0 Index]