param {PROPER} | R Documentation

## Some existing RNA-seq and gene expression microarray data

### Description

These are several datasets distributed with the package. They are simulation parameters estimated from existing RNA-seq data. The original raw count data were obtained from reCount website.

### Usage

    data(cheung)
    data(gilad)
    data(bottomly)
    data(maqc)
    data(GE.human)
    data(pbmc)

### Details

The data include:

- cheung: parameters from Cheung data. They are measurements from unrelated individuals, so the dispersions are large.

- gilad: parameters from Gilad data. They are for Human liver sample comparisons between male and female. This dataset has moderate dispersions.

- bottomly: parameters from Bottomly data. They compare two strains of inbred mice and the within group dispersions are small.

- maqc: MAQC data which are technical replicates. There are no biological variation from the replicates, so the dispersions are close to 0.

- GE.human: a vector of aggregated counts from all samples in Cheung data. This is used for generating marginal expression distribution when provide sequnencing depth.

- pbmc: data from gene expression microarray data. This is for an example of using historical data to estimate effect sizes.

### Author(s)

Hao Wu <hao.wu@emory.edu>

[Package PROPER version 1.12.0 Index]