GenomicRegionsComparison {PREDA} | R Documentation

## compare GenomicRegions objects to identify overlaps and differences

### Description

compare GenomicRegions objects to identify overlaps and differences

### Usage

    GenomicRegionsComparison(.Object1, .Object2)

### Arguments

`.Object1` | An object of Class GenomicRegions
`.Object2` | An object of Class GenomicRegions

### Details

Compare GenomicRegions objects to identify overlaps and differences

### Value

A list containing:

`overlapping.regions` | GenomicRegions object describing the overlapping regions between input object1 and object2
`difference.1.2` | GenomicRegions object describing the regions from input object1 not overlapping regions from object2
`difference.2.1` | GenomicRegions object describing the regions from input object2 not overlapping regions from object1
`GenomicRegions1.number` | Number of genomic regions in input object1
`GenomicRegions2.number` | Number of genomic regions in input object2
`overlapping.number` | Number of overlapping genomic regions between input object1 and object2
`GenomicRegions1.totalspan` | Total span of genomic regions in input object1
`GenomicRegions2.totalspan` | Total span of genomic regions in input object2
`overlapping.totalspan` | Total span of overlapping genomic regions between input object1 and object2
`overlap.VS.GenomicRegions1.ratio` | Ratio between overlapping regions and regions from input object1
`overlap.VS.GenomicRegions2.ratio` | Ratio between overlapping regions and regions from input object2

### Author(s)

Francesco Ferrari

### See Also

`GenomicRegionsFindOverlap`, `GenomicRegions`

[Package PREDA version 1.26.1 Index]